Commits · 90c86fc349d7c31c3709a50eb87be7a9a505a26a · Xavier Grand / bolero

Browse files

Nov 21, 2023
- bind /scratch to pollux profile in nextflow.config · 90c86fc3
  Xavier Grand authored Nov 21, 2023
  
  90c86fc3
- bind /scratch to pollux profile in nextflow.config · 9b7797ad
  Xavier Grand authored Nov 21, 2023
  
  9b7797ad
- modify GSP default seq · 901b1a9d
  Xavier Grand authored Nov 21, 2023
  
  901b1a9d
- Update junction_nanosplicer rna_count start_positions to version 1.1 · c0e86792
  Xavier Grand authored Nov 21, 2023
  
  c0e86792
Nov 16, 2023
- src/bolero.nf · ee385102
  Xavier Grand authored Nov 16, 2023
  
  ee385102
Nov 15, 2023
- src/.docker_modules/r-bolero/1.1/HBV_RNAs_count.R · 1dfa32c2
  Xavier Grand authored Nov 15, 2023
  
  1dfa32c2
Oct 27, 2023
- Add r-bolero v1.1, new graphics. · 26b575d9
  Xavier Grand authored Oct 27, 2023
  
  26b575d9
Oct 26, 2023
- Add r-bolero:1.1 to adapt graphical representation. · 705089e9
  Xavier Grand authored Oct 26, 2023
  
  705089e9
Sep 26, 2023
- Add pychopper instead porechop not functionnal · 4dc89d1a
  Xavier Grand authored Sep 26, 2023
  
  4dc89d1a
Aug 29, 2023
- Modif README.md · 33c2088a
  Xavier Grand authored Aug 29, 2023
  
  33c2088a
Aug 18, 2023
- minor modif porechop/main.nf --input ../ · e83abf7a
  Xavier Grand authored Aug 18, 2023
  
  e83abf7a
- minor modif porechop/main.nf --input $(readlink -f ../) · 614ced31
  Xavier Grand authored Aug 18, 2023
  
  614ced31
- minor modif porechop/main.nf --input ../ · e20f15e6
  Xavier Grand authored Aug 18, 2023
  
  e20f15e6
- Modify samtools/main.nf AS filter from 500 to 100. · 71c8b121
  Xavier Grand authored Aug 18, 2023
  
  71c8b121
Aug 17, 2023
- Add Alignment Score filtration but need to take into account the length of reads. · 372438ee
  Xavier Grand authored Aug 17, 2023
  
  372438ee
Aug 16, 2023
- Add porechop and compress all fastq files during the workflow. · eb1df0db
  Xavier Grand authored Aug 16, 2023
  
  eb1df0db
- add 390bp filtration of reads. · 29498d03
  Xavier Grand authored Aug 16, 2023
  
  29498d03
- Update r-bolero scripts to future parallelisation · 9e7e093c
  Xavier Grand authored Aug 16, 2023
  
  9e7e093c
Aug 09, 2023
- Modification of JWR_checker.py of NanoSplicer tool and corresponding Dockerfile · 68fe4dca
  Xavier Grand authored Aug 9, 2023
  
  68fe4dca
Aug 08, 2023
- debug HBV_RNAs_count.R and push Docker xgrand/r-bolero:1.0 · 91a010e8
  Xavier Grand authored Aug 8, 2023
  
  91a010e8
- Mofify Junction_NanoSplicer.R to take empty files and dataframes · 8440ee8e
  Xavier Grand authored Aug 8, 2023
  
  8440ee8e
Aug 04, 2023
- Modif src/.docker_modules/r-bolero/1.0/Junctions_NanoSplicer.R... · 361707e9
  Xavier Grand authored Aug 4, 2023
  361707e9
- Debug r-bolero scripts and Docker · 8561de68
  Xavier Grand authored Aug 4, 2023
  
  8561de68
Aug 03, 2023
- Add errorStrategy 'ignore' to nanosplicer process · 37436e4d
  Xavier Grand authored Aug 3, 2023
  
  37436e4d
- Modif Dockerfile r-bolero:1.0 to install tidyverse properly · dddc1e0c
  Xavier Grand authored Aug 3, 2023
  
  dddc1e0c
Aug 01, 2023
- Resolution petits bugs · a59be7fa
  Xavier Grand authored Aug 1, 2023
  
  a59be7fa
- Merge branch 'Alia' into 'master' · 75233da6
  Xavier Grand authored Aug 1, 2023
  75233da6
Jul 26, 2023
- Merge branch 'Alia' of http://10.69.67.13:80/testoni-lab/bolero into Alia · 1e4d6e43
  aliarifki authored Jul 26, 2023
  
  1e4d6e43
- Nettoyage du code · ec9840f9
  aliarifki authored Jul 26, 2023
  
  ec9840f9
Jul 18, 2023
- Merge branch 'Alia' into 'master' · 1c9e68e0
  Xavier Grand authored Jul 18, 2023
  1c9e68e0
- Merge branch 'master' into 'Alia' · 45201693
  Xavier Grand authored Jul 18, 2023
  45201693
- Modif config pollux · bc24e4f2
  Xavier Grand authored Jul 18, 2023
  
  bc24e4f2
- Mise à jour de CQ bam · b62bc3f0
  aliarifki authored Jul 18, 2023
  
  b62bc3f0
- Correction du CQ bam · 83d4a114
  aliarifki authored Jul 18, 2023
  
  83d4a114
Jul 17, 2023
- Mise à jour du script · 8aafb7ae
  aliarifki authored Jul 17, 2023
  
  8aafb7ae
- Mise à jour du script · 29e4d5b9
  aliarifki authored Jul 17, 2023
  
  29e4d5b9
- Suppression de l'option config_file · dadbebbc
  aliarifki authored Jul 17, 2023
  
  dadbebbc
Jul 13, 2023
- Configuration file for barcoding gpu · 662bcfc8
  aliarifki authored Jul 13, 2023
  
  662bcfc8
Jul 10, 2023
- nouveaux paramètres minimap · d52844c5
  aliarifki authored Jul 10, 2023
  
  d52844c5
Jul 07, 2023
- Ajout du log de gsp · d4dd5063
  aliarifki authored Jul 7, 2023
  
  d4dd5063