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This repository is a template containing scripts to help you build your own nextflow pipeline.

A single-cell RNA-Seq data analysis performed with scanpy, starting from the integration of multiple datasets for removing the batch effect, up to cell trajectory inference with PAGA

Formation on scRNA data analysis

RNA-seq analysis of cell layer-specific expression of gene PhDEF in Petunia petals

Functional analysis of RNAseq differential expression analysis, on competence mutants. Use of COG annotation for enrichment analysis in Legionella pneumophila.

minimal git repo

Infer identity of myoblasts, at several development stages, through Seurat single-cell clustering analysis.

Scripts for paper Evaluation of genome and base editing tools in maize protoplasts (Fierlej et al, Front. Plant Sci. 2022)