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Commit 90c86fc3 authored by Xavier Grand's avatar Xavier Grand
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bind /scratch to pollux profile in nextflow.config

parent 9b7797ad
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......@@ -72,43 +72,6 @@ profiles {
}
}
}
pollux {
singularity.enabled = true
singularity.cacheDir = "./bin/"
singularity.runOptions = "--bind /data,/home,/scratch"
process {
errorStrategy = 'finish'
memory = '256GB'
withLabel: big_mem_mono_cpus {
cpus = 1
}
withLabel: big_mem_multi_cpus {
cpus = 16
}
withLabel: small_mem_mono_cpus {
cpus = 1
memory = '2GB'
}
withLabel: small_mem_multi_cpus {
cpus = 8
memory = '2GB'
}
withLabel: mid_mem_mono_cpus {
cpus = 1
memory = '8GB'
}
withLabel: mid_mem_multi_cpus {
cpus = 8
memory = '8GB'
}
withLabel: gpus {
maxForks = 1
containerOptions = '--nv'
}
}
}
singularity {
singularity.enabled = true
singularity.cacheDir = "./bin/"
......@@ -143,7 +106,7 @@ profiles {
pollux {
singularity.enabled = true
singularity.cacheDir = "./bin/"
singularity.runOptions = "--bind /data,/home"
singularity.runOptions = "--bind /data,/home,/scratch"
process {
errorStrategy = 'finish'
memory = '32GB'
......
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