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Visium Analysis Pipeline to process 10x Visium data from pituitary tumors

"Introduction to deep learning" training course materials, based on Fidle (https://fidle.cnrs.fr/) training course

This repository is a template containing scripts to help you build your own nextflow pipeline.

Scripts used for scRNA-Seq and ChIP-Seq analysis in paper "Interplay between petal identity and cell layer identity in petunia flowers", by Cavallini-Speisser, Désert et al.

Database of public ChIA-PET data to visualise proximal interactions.