diff --git a/src/nextflow.config b/src/nextflow.config index 0211a1bbf37ad5b2a16595df98112ab375bc3324..b96e81111211fc1598c13896654dce97456bdeb3 100755 --- a/src/nextflow.config +++ b/src/nextflow.config @@ -72,43 +72,6 @@ profiles { } } } - - pollux { - singularity.enabled = true - singularity.cacheDir = "./bin/" - singularity.runOptions = "--bind /data,/home,/scratch" - process { - errorStrategy = 'finish' - memory = '256GB' - withLabel: big_mem_mono_cpus { - cpus = 1 - } - withLabel: big_mem_multi_cpus { - cpus = 16 - } - withLabel: small_mem_mono_cpus { - cpus = 1 - memory = '2GB' - } - withLabel: small_mem_multi_cpus { - cpus = 8 - memory = '2GB' - } - withLabel: mid_mem_mono_cpus { - cpus = 1 - memory = '8GB' - } - withLabel: mid_mem_multi_cpus { - cpus = 8 - memory = '8GB' - } - withLabel: gpus { - maxForks = 1 - containerOptions = '--nv' - } - } - } - singularity { singularity.enabled = true singularity.cacheDir = "./bin/" @@ -143,7 +106,7 @@ profiles { pollux { singularity.enabled = true singularity.cacheDir = "./bin/" - singularity.runOptions = "--bind /data,/home" + singularity.runOptions = "--bind /data,/home,/scratch" process { errorStrategy = 'finish' memory = '32GB'