Ajout du log de gsp

src/bolero.nf

@@ -117,6 +117,7 @@ params.rna_qc_out = "09_quality_control/"
 
 log.info "fast5/q folder : ${params.input}"
 log.info "5'RACE adapter sequence : ${params.adapt}"
+log.info "Gene specific primer : ${params.gsp}"
 if(!params.skipBC) log.info "Guppy basecalling calculation using GPU mode : ${params.gpu_mode}."
 log.info "Genome file : ${params.genome}"
 log.info "Genome annotation file : ${params.gtf}"
@@ -275,7 +276,8 @@ workflow {
 
   hbv_genome(cut_5pRACE.out.fastq_cutadapt, genome.collect())
   sort_index_bam(hbv_genome.out.bam)
-  control_bam(basecall_fast5_gpu.out.sequencing_summary.collect(), sort_index_bam.out.indexed_bam)
+  //il faut ajouter une boucle if pour le mode cpu/gpu
+  //control_bam(basecall_fast5_gpu.out.sequencing_summary.collect(), sort_index_bam.out.indexed_bam)
 
   //###################### START POSITIONS #######################