From d4dd50634b048e05b72f460ac1ba9be7f8bdd606 Mon Sep 17 00:00:00 2001
From: aliarifki <aliarifki@outlook.fr>
Date: Fri, 7 Jul 2023 11:05:45 +0200
Subject: [PATCH] Ajout du log de gsp
---
src/bolero.nf | 4 +++-
1 file changed, 3 insertions(+), 1 deletion(-)
diff --git a/src/bolero.nf b/src/bolero.nf
index cc7cc1d..5010be1 100755
--- a/src/bolero.nf
+++ b/src/bolero.nf
@@ -117,6 +117,7 @@ params.rna_qc_out = "09_quality_control/"
log.info "fast5/q folder : ${params.input}"
log.info "5'RACE adapter sequence : ${params.adapt}"
+log.info "Gene specific primer : ${params.gsp}"
if(!params.skipBC) log.info "Guppy basecalling calculation using GPU mode : ${params.gpu_mode}."
log.info "Genome file : ${params.genome}"
log.info "Genome annotation file : ${params.gtf}"
@@ -275,7 +276,8 @@ workflow {
hbv_genome(cut_5pRACE.out.fastq_cutadapt, genome.collect())
sort_index_bam(hbv_genome.out.bam)
- control_bam(basecall_fast5_gpu.out.sequencing_summary.collect(), sort_index_bam.out.indexed_bam)
+ //il faut ajouter une boucle if pour le mode cpu/gpu
+ //control_bam(basecall_fast5_gpu.out.sequencing_summary.collect(), sort_index_bam.out.indexed_bam)
//###################### START POSITIONS #######################
--
GitLab