diff --git a/src/bolero.nf b/src/bolero.nf index cc7cc1d64c5b92767940ce91d2701adc11b8f648..5010be1df7ff7cf8d6c3ebca233111006fb2672e 100755 --- a/src/bolero.nf +++ b/src/bolero.nf @@ -117,6 +117,7 @@ params.rna_qc_out = "09_quality_control/" log.info "fast5/q folder : ${params.input}" log.info "5'RACE adapter sequence : ${params.adapt}" +log.info "Gene specific primer : ${params.gsp}" if(!params.skipBC) log.info "Guppy basecalling calculation using GPU mode : ${params.gpu_mode}." log.info "Genome file : ${params.genome}" log.info "Genome annotation file : ${params.gtf}" @@ -275,7 +276,8 @@ workflow { hbv_genome(cut_5pRACE.out.fastq_cutadapt, genome.collect()) sort_index_bam(hbv_genome.out.bam) - control_bam(basecall_fast5_gpu.out.sequencing_summary.collect(), sort_index_bam.out.indexed_bam) + //il faut ajouter une boucle if pour le mode cpu/gpu + //control_bam(basecall_fast5_gpu.out.sequencing_summary.collect(), sort_index_bam.out.indexed_bam) //###################### START POSITIONS #######################