minor modif porechop/main.nf --input $(readlink -f ../)

src/nf_modules/porechop/main.nf

@@ -19,6 +19,6 @@ process porechop {
 """
 mkdir ${barcode}
 cd ${barcode}/
-porechop --input ../${fastq} -o ${barcode}_merged_porechoped.fastq.gz --threads ${task.cpus}
+porechop --input \$(readlink -f ../${fastq}) -o ${barcode}_merged_porechoped.fastq.gz --threads ${task.cpus}
 """
 }
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