Commits · 3b275df6fbcbedad1485030ed872cafb86c26f6c · Xavier Grand / bolero

Sep 16, 2024
- Some cleaning. · 3b275df6
  Xavier Grand authored 6 months ago
  
  3b275df6
Sep 12, 2024
- Correction README.md suppress gtf option · 7bd3beeb
  Xavier Grand authored 6 months ago
  
  7bd3beeb
Sep 11, 2024
- include guppy only if skipBC is False. · 484a7db0
  Xavier Grand authored 6 months ago
  
  484a7db0
Aug 09, 2024
- Modif multi cpus to junction nanosplicer and rebuild docker. · 8fa681cb
  Xavier Grand authored 7 months ago
  
  8fa681cb
- Modif r-bolero version junction-nanosplicer module · 02e29a36
  Xavier Grand authored 7 months ago
  
  02e29a36
- Modify input to start_positions to multithreading and rebuild docker. · c6c0db92
  Xavier Grand authored 7 months ago
  
  c6c0db92
- Modify label to multi cpus of rna_count and start_positions modules. · 18e4119a
  Xavier Grand authored 7 months ago
  
  18e4119a
Jul 12, 2024
- Typo dans src/.docker_modules/r-bolero/1.2/HBV_RNAs_count.R · 99fd30d8
  Xavier Grand authored 8 months ago
  
  99fd30d8
Jul 11, 2024
- modif concatenate/main.nf · 77ffd261
  Xavier Grand authored 8 months ago
  
  77ffd261
- nextflow.config · f158995c
  Xavier Grand authored 8 months ago
  
  f158995c
- nextflow.config · b6c22230
  Xavier Grand authored 8 months ago
  
  b6c22230
- nextflow.config · 029c2816
  Xavier Grand authored 8 months ago
  
  029c2816
- nextflow.config · 52d19c9a
  Xavier Grand authored 8 months ago
  
  52d19c9a
Jul 10, 2024
- Docker r-bolero 1.2 docker profile functionning · 65ac98b5
  Xavier Grand authored 8 months ago
  
  65ac98b5
Jul 04, 2024
- Suppress params.5p_seq because raise error · b94c5d26
  Xavier Grand authored 8 months ago
  
  b94c5d26
Apr 15, 2024
- LICENSES and r-bolero_1.2 · 102e16dd
  Xavier Grand authored 11 months ago
  
  102e16dd
Feb 20, 2024
- Add orelob.nf, pipeline to analyse 3pRACE-Nanopore RNAseq. · 260af0c7
  Xavier Grand authored 1 year ago
  
  260af0c7
Jan 05, 2024
- bolero.nf params.in · 61b176c8
  Xavier Grand authored 1 year ago
  
  61b176c8
Nov 21, 2023
- bind /scratch to pollux profile in nextflow.config · 90c86fc3
  Xavier Grand authored 1 year ago
  
  90c86fc3
- bind /scratch to pollux profile in nextflow.config · 9b7797ad
  Xavier Grand authored 1 year ago
  
  9b7797ad
- modify GSP default seq · 901b1a9d
  Xavier Grand authored 1 year ago
  
  901b1a9d
- Update junction_nanosplicer rna_count start_positions to version 1.1 · c0e86792
  Xavier Grand authored 1 year ago
  
  c0e86792
Nov 16, 2023
- src/bolero.nf · ee385102
  Xavier Grand authored 1 year ago
  
  ee385102
Nov 15, 2023
- src/.docker_modules/r-bolero/1.1/HBV_RNAs_count.R · 1dfa32c2
  Xavier Grand authored 1 year ago
  
  1dfa32c2
Oct 27, 2023
- Add r-bolero v1.1, new graphics. · 26b575d9
  Xavier Grand authored 1 year ago
  
  26b575d9
Oct 26, 2023
- Add r-bolero:1.1 to adapt graphical representation. · 705089e9
  Xavier Grand authored 1 year ago
  
  705089e9
Sep 26, 2023
- Add pychopper instead porechop not functionnal · 4dc89d1a
  Xavier Grand authored 1 year ago
  
  4dc89d1a
Aug 18, 2023
- minor modif porechop/main.nf --input ../ · e83abf7a
  Xavier Grand authored 1 year ago
  
  e83abf7a
- minor modif porechop/main.nf --input $(readlink -f ../) · 614ced31
  Xavier Grand authored 1 year ago
  
  614ced31
- minor modif porechop/main.nf --input ../ · e20f15e6
  Xavier Grand authored 1 year ago
  
  e20f15e6
- Modify samtools/main.nf AS filter from 500 to 100. · 71c8b121
  Xavier Grand authored 1 year ago
  
  71c8b121
Aug 17, 2023
- Add Alignment Score filtration but need to take into account the length of reads. · 372438ee
  Xavier Grand authored 1 year ago
  
  372438ee
Aug 16, 2023
- Add porechop and compress all fastq files during the workflow. · eb1df0db
  Xavier Grand authored 1 year ago
  
  eb1df0db
- add 390bp filtration of reads. · 29498d03
  Xavier Grand authored 1 year ago
  
  29498d03
- Update r-bolero scripts to future parallelisation · 9e7e093c
  Xavier Grand authored 1 year ago
  
  9e7e093c
Aug 09, 2023
- Modification of JWR_checker.py of NanoSplicer tool and corresponding Dockerfile · 68fe4dca
  Xavier Grand authored 1 year ago
  
  68fe4dca
Aug 08, 2023
- debug HBV_RNAs_count.R and push Docker xgrand/r-bolero:1.0 · 91a010e8
  Xavier Grand authored 1 year ago
  
  91a010e8
- Mofify Junction_NanoSplicer.R to take empty files and dataframes · 8440ee8e
  Xavier Grand authored 1 year ago
  
  8440ee8e
Aug 04, 2023
- Modif src/.docker_modules/r-bolero/1.0/Junctions_NanoSplicer.R... · 361707e9
  Xavier Grand authored 1 year ago
  
  Modif src/.docker_modules/r-bolero/1.0/Junctions_NanoSplicer.R as.data.frame(single_junction) to rbind
  361707e9
- Debug r-bolero scripts and Docker · 8561de68
  Xavier Grand authored 1 year ago
  
  8561de68