Commits · d14e7205670949b86bdb54d9cb7d991a2888cd43 · nfontrod / nextflow · GitLab

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Dec 20, 2018
- deepTools: add test for 2 bam files · d14e7205
  Laurent Modolo authored 6 years ago
  
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  d14e7205
Dec 19, 2018
- deepTools: add plot_profile module · 3fede7c6
  Laurent Modolo authored 6 years ago
  
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  3fede7c6
- deepTools: add compute_matrix module · b25a6418
  Laurent Modolo authored 6 years ago
  
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  b25a6418
- deepTools: tests.sh for compute_matrix · 0a98c166
  Laurent Modolo authored 6 years ago
  
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  0a98c166
- deepTools: bam_to_bigwig working · a095fa9d
  Laurent Modolo authored 6 years ago
  
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  a095fa9d
- deepTools: add config file for bam_to_bigwig · 543e35a0
  Laurent Modolo authored 6 years ago
  
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  543e35a0
- nf_modules: fix withname -> withName in config files · 85a68216
  Laurent Modolo authored 6 years ago
  
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  85a68216
Oct 26, 2018
- nf modules config: remove cpus info · 03f44eef
  Laurent Modolo authored 6 years ago
  
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  03f44eef
Oct 24, 2018
- add clusterOption for psmn to all config files · e057e9a1
  Laurent Modolo authored 6 years ago
  
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  e057e9a1
Oct 23, 2018
- SAMtools: nf update psmn config · 0d23365b
  Laurent Modolo authored 6 years ago
  
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  0d23365b
- FastQC: nf update psmn config · 5760392e
  Laurent Modolo authored 6 years ago
  
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  5760392e
- samblaster: nf update psmn config · eb58b93f
  Laurent Modolo authored 6 years ago
  
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  eb58b93f
- SRAtoolkit: nf update psmn config · 8b66dd73
  Laurent Modolo authored 6 years ago
  
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  8b66dd73
- HTSeq: nf update psmn config · 639c47ed
  Laurent Modolo authored 6 years ago
  
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  639c47ed
- Bowtie: nf update psmn config · 221bd018
  Laurent Modolo authored 6 years ago
  
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  221bd018
- BWA: nf update psmn config · 46c1f9f2
  Laurent Modolo authored 6 years ago
  
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  46c1f9f2
- sambamba: nf update psmn config · 14164fee
  Laurent Modolo authored 6 years ago
  
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  14164fee
- Bowtie2: nf update config for psmn · 2973fe82
  Laurent Modolo authored 6 years ago
  
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  2973fe82
- RSEM: nf update indexing config for psmn · c95c7e0c
  Laurent Modolo authored 6 years ago
  
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  c95c7e0c
- nf module: update executor from psmn to sge · 9fdc0424
  Laurent Modolo authored 6 years ago
  
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  9fdc0424
- MultiQC: nf update psmn config · 1900998a
  Laurent Modolo authored 6 years ago
  
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  1900998a
- RSEM: nf update psmn config · 68aa07a8
  Laurent Modolo authored 6 years ago
  
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  68aa07a8
- UrQt: cleanup old config · c34e43a8
  Laurent Modolo authored 6 years ago
  
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  c34e43a8
- MUSIC: update psmn config · 86a3e164
  Laurent Modolo authored 6 years ago
  
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  86a3e164
- nf config file update nf syntax for process · 3e2c83f3
  Laurent Modolo authored 6 years ago
  
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  3e2c83f3
- nf config: rename sge to psmn · fa486dc6
  Laurent Modolo authored 6 years ago
  
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  fa486dc6
- Kallisto: update nf config for PSMN · 35e3593b
  Laurent Modolo authored 6 years ago
  
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  35e3593b
- BEDtools: update nf config file for PSMN · c1446208
  Laurent Modolo authored 6 years ago
  
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  c1446208
- UrQt: update nf config file for the PSMN · e8805ca1
  Laurent Modolo authored 6 years ago
  
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  e8805ca1
- cutadapt: update nf config files for the PSMN · 0e1bad5e
  Laurent Modolo authored 6 years ago
  
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  0e1bad5e
Sep 17, 2018
- sambamba: add nf files · bc91a90e
  Laurent Modolo authored 6 years ago
  
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  bc91a90e
- samblaster: add nf files · 05dfb3b0
  Laurent Modolo authored 6 years ago
  
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  05dfb3b0
- BWA: add nf file for paired mapping · f40aa5d9
  Laurent Modolo authored 6 years ago
  
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  f40aa5d9
Sep 13, 2018
- Kallisto.nf: update report format · aac64942
  Laurent Modolo authored 6 years ago
  
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  aac64942
Aug 31, 2018
- nf_modules: fix tests.sh to use local nextflow bin · 5386a286
  Laurent Modolo authored 6 years ago
  
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  5386a286
- Kallisto: fix tests.sh · c43032e6
  Laurent Modolo authored 6 years ago
  
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  c43032e6
Aug 29, 2018
- MUSIC: change read size param · 3bbe96f6
  Laurent Modolo authored 6 years ago
  
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  3bbe96f6
- MUSIC: add tests.sh file to run the tests · cf94bb20
  Laurent Modolo authored 6 years ago
  
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  cf94bb20
Aug 27, 2018
- MUISC: .config: update config to match last single nf · 666d47e1
  Laurent Modolo authored 6 years ago
  
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  666d47e1
- peak_calling_single.nf: select lp0 autoamtically · 51f89832
  Laurent Modolo authored 6 years ago
  
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  51f89832