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Unverified Commit 8b66dd73 authored by Laurent Modolo's avatar Laurent Modolo
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SRAtoolkit: nf update psmn config

parent 639c47ed
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......@@ -11,13 +11,12 @@ profiles {
psmn {
process{
withname: fastq_dump {
beforeScript = "module purge; module load SRAtoolkit/2.8.2"
beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
module = "SRAtoolkit/2.8.2"
executor = "sge"
cpus = 1
memory = "5GB"
time = "6h"
queueSize = 1000
pollInterval = '60sec'
memory = "20GB"
time = "12h"
queue = 'monointeldeb128'
}
}
......
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