sambamba: nf update psmn config

src/nf_modules/sambamba/index_bams.config

@@ -11,7 +11,14 @@ profiles {
   psmn {
     process{
       withname: index_bam {
-        beforeScript = "module purge; module load sambamba/0.6.7"
+        beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
+        module = "sambamba/0.6.7"
+        executor = "sge"
+        cpus = 16
+        memory = "30GB"
+        time = "24h"
+        queue = 'E5-2670deb128A,E5-2670deb128B,E5-2670deb128C,E5-2670deb128D,E5-2670deb128E,E5-2670deb128F'
+        penv = 'openmp16'
       }
     }
   }

src/nf_modules/sambamba/sort_bams.config

@@ -11,7 +11,14 @@ profiles {
   psmn {
     process{
       withname: sort_bam {
-        beforeScript = "module purge; module load sambamba/0.6.7"
+        beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
+        module = "sambamba/0.6.7"
+        executor = "sge"
+        cpus = 16
+        memory = "30GB"
+        time = "24h"
+        queue = 'E5-2670deb128A,E5-2670deb128B,E5-2670deb128C,E5-2670deb128D,E5-2670deb128E,E5-2670deb128F'
+        penv = 'openmp16'
       }
     }
   }

src/nf_modules/sambamba/split_bams.config

@@ -11,7 +11,14 @@ profiles {
   psmn {
     process{
       withname: split_bam {
-        beforeScript = "module purge; module load sambamba/0.6.7"
+        beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
+        module = "sambamba/0.6.7"
+        executor = "sge"
+        cpus = 16
+        memory = "30GB"
+        time = "24h"
+        queue = 'E5-2670deb128A,E5-2670deb128B,E5-2670deb128C,E5-2670deb128D,E5-2670deb128E,E5-2670deb128F'
+        penv = 'openmp16'
       }
     }
   }