nf_modules: fix tests.sh to use local nextflow bin

src/nf_modules/BEDtools/tests.sh

-nextflow src/nf_modules/BEDtools/fasta_from_bed.nf \
+./nextflow src/nf_modules/BEDtools/fasta_from_bed.nf \
   -c src/nf_modules/BEDtools/fasta_from_bed.config \
   -profile docker \
   --fasta "data/tiny_dataset/fasta/tiny_v2.fasta" \

src/nf_modules/FastQC/tests.sh

-nextflow src/nf_modules/FastQC/fastqc_paired.nf \
+./nextflow src/nf_modules/FastQC/fastqc_paired.nf \
   -c src/nf_modules/FastQC/fastqc_paired.config \
   -profile docker \
   --fastq "data/tiny_dataset/fastq/tiny_R{1,2}.fastq"
 
-nextflow src/nf_modules/FastQC/fastqc_single.nf \
+./nextflow src/nf_modules/FastQC/fastqc_single.nf \
   -c src/nf_modules/FastQC/fastqc_single.config \
   -profile docker \
   --fastq "data/tiny_dataset/fastq/tiny_S.fastq"

src/nf_modules/HTSeq/tests.sh

-nextflow src/nf_modules/HTSeq/htseq.nf \
+./nextflow src/nf_modules/HTSeq/htseq.nf \
   -c src/nf_modules/HTSeq/htseq.config \
   -profile docker \
   --gtf "data/tiny_dataset/annot/tiny.gff" \

src/nf_modules/MultiQC/tests.sh

-nextflow src/nf_modules/MultiQC/multiqc_paired.nf \
+./nextflow src/nf_modules/MultiQC/multiqc_paired.nf \
   -c src/nf_modules/MultiQC/multiqc_paired.config \
   -profile docker \
   --fastq "data/tiny_dataset/fastq/tiny_R{1,2}.fastq"
 
-nextflow src/nf_modules/MultiQC/multiqc_single.nf \
+./nextflow src/nf_modules/MultiQC/multiqc_single.nf \
   -c src/nf_modules/MultiQC/multiqc_single.config \
   -profile docker \
   --fastq "data/tiny_dataset/fastq/tiny_S.fastq"

src/nf_modules/RSEM/tests.sh

-nextflow src/nf_modules/RSEM/indexing.nf \
+./nextflow src/nf_modules/RSEM/indexing.nf \
   -c src/nf_modules/RSEM/indexing.config \
   -profile docker \
   --fasta "data/tiny_dataset/fasta/tiny_v2.fasta" \
   --annotation "data/tiny_dataset/annot/tiny.gff"
 
-nextflow src/nf_modules/RSEM/quantification_single.nf \
+./nextflow src/nf_modules/RSEM/quantification_single.nf \
   -c src/nf_modules/RSEM/quantification_single.config \
   -profile docker \
   --index "results/mapping/index/tiny_v2.index*" \
   --fastq "data/tiny_dataset/fastq/tiny*_S.fastq"
 
-nextflow src/nf_modules/RSEM/quantification_paired.nf \
+./nextflow src/nf_modules/RSEM/quantification_paired.nf \
   -c src/nf_modules/RSEM/quantification_paired.config \
   -profile docker \
   --index "results/mapping/index/tiny_v2.index*" \

src/nf_modules/SAMtools/tests.sh

-nextflow src/nf_modules/SAMtools/sort_bams.nf \
+./nextflow src/nf_modules/SAMtools/sort_bams.nf \
   -c src/nf_modules/SAMtools/sort_bams.config \
   -profile docker \
   --bam "data/tiny_dataset/map/tiny_v2.bam"
 
-nextflow src/nf_modules/SAMtools/index_bams.nf \
+./nextflow src/nf_modules/SAMtools/index_bams.nf \
   -c src/nf_modules/SAMtools/index_bams.config \
   -profile docker \
   --bam "data/tiny_dataset/map/tiny_v2.sort.bam"
 
-nextflow src/nf_modules/SAMtools/split_bams.nf \
+./nextflow src/nf_modules/SAMtools/split_bams.nf \
   -c src/nf_modules/SAMtools/split_bams.config \
   -profile docker \
   --bam "data/tiny_dataset/map/tiny_v2.bam"
 
-nextflow src/nf_modules/SAMtools/filter_bams.nf \
+./nextflow src/nf_modules/SAMtools/filter_bams.nf \
   -c src/nf_modules/SAMtools/filter_bams.config \
   -profile docker \
   --bam "data/tiny_dataset/map/tiny_v2.bam" \

src/nf_modules/SRAtoolkit/tests.sh

-nextflow src/nf_modules/SRAtoolkit/fastqdump.nf \
+./nextflow src/nf_modules/SRAtoolkit/fastqdump.nf \
   -c src/nf_modules/SRAtoolkit/fastqdump.config \
   -profile docker \
   --list_srr "src/nf_modules/SRAtoolkit/list-srr.txt"

src/nf_modules/UrQt/tests.sh

-nextflow src/nf_modules/UrQt/trimming_paired.nf \
+./nextflow src/nf_modules/UrQt/trimming_paired.nf \
   -c src/nf_modules/UrQt/trimming_paired.config \
   -profile docker \
   --fastq "data/tiny_dataset/fastq/tiny_R{1,2}.fastq"
 
-nextflow src/nf_modules/UrQt/trimming_single.nf \
+./nextflow src/nf_modules/UrQt/trimming_single.nf \
   -c src/nf_modules/UrQt/trimming_single.config \
   -profile docker \
   --fastq "data/tiny_dataset/fastq/tiny_R{1,2}.fastq"

src/nf_modules/cutadapt/tests.sh

-nextflow src/nf_modules/cutadapt/adaptor_removal_paired.nf \
+./nextflow src/nf_modules/cutadapt/adaptor_removal_paired.nf \
   -c src/nf_modules/cutadapt/adaptor_removal_paired.config \
   -profile docker \
   --fastq "data/tiny_dataset/fastq/tiny_R{1,2}.fastq"
 
-nextflow src/nf_modules/cutadapt/adaptor_removal_single.nf \
+./nextflow src/nf_modules/cutadapt/adaptor_removal_single.nf \
   -c src/nf_modules/cutadapt/adaptor_removal_single.config \
   -profile docker \
   --fastq "data/tiny_dataset/fastq/tiny*_S.fastq"
 
-nextflow src/nf_modules/cutadapt/trimming_paired.nf \
+./nextflow src/nf_modules/cutadapt/trimming_paired.nf \
   -c src/nf_modules/cutadapt/trimming_paired.config \
   -profile docker \
   --fastq "data/tiny_dataset/fastq/tiny_R{1,2}.fastq"
 
-nextflow src/nf_modules/cutadapt/trimming_single.nf \
+./nextflow src/nf_modules/cutadapt/trimming_single.nf \
   -c src/nf_modules/cutadapt/trimming_single.config \
   -profile docker \
   --fastq "data/tiny_dataset/fastq/tiny*_S.fastq"