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Unverified Commit c43032e6 authored by Laurent Modolo's avatar Laurent Modolo
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Kallisto: fix tests.sh

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nextflow src/nf_modules/Kallisto/indexing.nf \
./nextflow src/nf_modules/Kallisto/indexing.nf \
-c src/nf_modules/Kallisto/indexing.config \
-profile docker \
--fasta "data/tiny_dataset/fasta/tiny_v2.fasta"
nextflow src/nf_modules/Kallisto/mapping_single.nf \
./nextflow src/nf_modules/Kallisto/mapping_single.nf \
-c src/nf_modules/Kallisto/mapping_single.config \
-profile docker \
--index "results/mapping/index/tiny_v2.index" \
--fastq "data/tiny_dataset/fastq/tiny*_S.fastq"
nextflow src/nf_modules/Kallisto/mapping_paired.nf \
./nextflow src/nf_modules/Kallisto/mapping_paired.nf \
-c src/nf_modules/Kallisto/mapping_paired.config \
-profile docker \
--index "results/mapping/index/tiny_v2.index" \
......
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