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nfontrod
nextflow
Commits
68aa07a8
Unverified
Commit
68aa07a8
authored
6 years ago
by
Laurent Modolo
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RSEM: nf update psmn config
parent
c34e43a8
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src/nf_modules/RSEM/quantification_paired.config
+8
-1
8 additions, 1 deletion
src/nf_modules/RSEM/quantification_paired.config
src/nf_modules/RSEM/quantification_single.config
+8
-1
8 additions, 1 deletion
src/nf_modules/RSEM/quantification_single.config
with
16 additions
and
2 deletions
src/nf_modules/RSEM/quantification_paired.config
+
8
−
1
View file @
68aa07a8
...
...
@@ -11,7 +11,14 @@ profiles {
psmn
{
process
{
withname
:
mapping_fastq
{
beforeScript
=
"module purge; module load RSEM/1.3.0; module load SAMtools/1.7"
beforeScript
=
"source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
module
=
"RSEM/1.3.0:SAMtools/1.7"
executor
=
"psmn"
cpus
=
16
memory
=
"30GB"
time
=
"24h"
queue
=
'E5-2670deb128A,E5-2670deb128B,E5-2670deb128C,E5-2670deb128D,E5-2670deb128E,E5-2670deb128F'
penv
=
'openmp16'
}
}
}
...
...
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src/nf_modules/RSEM/quantification_single.config
+
8
−
1
View file @
68aa07a8
...
...
@@ -11,7 +11,14 @@ profiles {
psmn
{
process
{
withname
:
mapping_fastq
{
beforeScript
=
"module purge; module load RSEM/1.3.0; module load SAMtools/1.7"
beforeScript
=
"source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
module
=
"RSEM/1.3.0:SAMtools/1.7"
executor
=
"psmn"
cpus
=
16
memory
=
"30GB"
time
=
"24h"
queue
=
'E5-2670deb128A,E5-2670deb128B,E5-2670deb128C,E5-2670deb128D,E5-2670deb128E,E5-2670deb128F'
penv
=
'openmp16'
}
}
}
...
...
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