diff --git a/src/nf_modules/RSEM/quantification_paired.config b/src/nf_modules/RSEM/quantification_paired.config index 5c52dce17939d232fd1011b0fce6a2dc27ab0ba5..30e5a2a68060c71a67699888eba4ee11865bad90 100644 --- a/src/nf_modules/RSEM/quantification_paired.config +++ b/src/nf_modules/RSEM/quantification_paired.config @@ -11,7 +11,14 @@ profiles { psmn { process{ withname: mapping_fastq { - beforeScript = "module purge; module load RSEM/1.3.0; module load SAMtools/1.7" + beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules" + module = "RSEM/1.3.0:SAMtools/1.7" + executor = "psmn" + cpus = 16 + memory = "30GB" + time = "24h" + queue = 'E5-2670deb128A,E5-2670deb128B,E5-2670deb128C,E5-2670deb128D,E5-2670deb128E,E5-2670deb128F' + penv = 'openmp16' } } } diff --git a/src/nf_modules/RSEM/quantification_single.config b/src/nf_modules/RSEM/quantification_single.config index 5c52dce17939d232fd1011b0fce6a2dc27ab0ba5..30e5a2a68060c71a67699888eba4ee11865bad90 100644 --- a/src/nf_modules/RSEM/quantification_single.config +++ b/src/nf_modules/RSEM/quantification_single.config @@ -11,7 +11,14 @@ profiles { psmn { process{ withname: mapping_fastq { - beforeScript = "module purge; module load RSEM/1.3.0; module load SAMtools/1.7" + beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules" + module = "RSEM/1.3.0:SAMtools/1.7" + executor = "psmn" + cpus = 16 + memory = "30GB" + time = "24h" + queue = 'E5-2670deb128A,E5-2670deb128B,E5-2670deb128C,E5-2670deb128D,E5-2670deb128E,E5-2670deb128F' + penv = 'openmp16' } } }