Commits · 5b50ecea03f85f45584869e8c31d910dc0659e50 · LBMC / nextflow

Apr 16, 2019
- bowtie2: add in2p3 config · 5b50ecea
  Laurent Modolo authored 5 years ago
  
  5b50ecea
- bowtie: add in2p3 config · 7fc46b3c
  Laurent Modolo authored 5 years ago
  
  7fc46b3c
- bedtools: update in2p3 config · a567c6aa
  Laurent Modolo authored 5 years ago
  
  a567c6aa
- kallisto: add in2p3 config · e16a1a9f
  Laurent Modolo authored 5 years ago
  
  e16a1a9f
- add .sh helpers for singularity on the ccin2p3 · 950e35f1
  Laurent Modolo authored 5 years ago
  
  950e35f1
- change .sif to .img for singularity img · a972f993
  Laurent Modolo authored 5 years ago
  
  a972f993
Apr 12, 2019
- kallisto: fix singularity tests · 70dc013f
  Laurent Modolo authored 5 years ago
  
  70dc013f
- kallisto: config for in2p3, add /usr/bin to path · e636850a
  Laurent Modolo authored 5 years ago
  
  e636850a
- kallisto: add verbose to indexing.nf · 5aaa2669
  Laurent Modolo authored 5 years ago
  
  5aaa2669
- kallisto: remove bash config · 5fca29e5
  Laurent Modolo authored 5 years ago
  
  5fca29e5
- kallisto: update in2p3 config · 2119e7bb
  Laurent Modolo authored 5 years ago
  
  2119e7bb
- kallisto: add info for in2p3 scratch · e943bb11
  Laurent Modolo authored 5 years ago
  
  e943bb11
- kallisto: test of in2p3 config file · 0304aca0
  Laurent Modolo authored 5 years ago
  
  0304aca0
- kallisto: add singularity script for ccin2p3 · 5f6b5a6a
  Laurent Modolo authored 5 years ago
  
  5f6b5a6a
- umi_tools: add singularity module · fa64596b
  Laurent Modolo authored 5 years ago
  
  fa64596b
- rm umitools modules to only keep umi_tools · 9fb4e109
  Laurent Modolo authored 5 years ago
  
  9fb4e109
- umi_tools: add docker files · fea9a9ee
  Laurent Modolo authored 5 years ago
  
  fea9a9ee
Apr 09, 2019
- cutadapt: add v2.1 · d280e93a
  Laurent Modolo authored 5 years ago
  
  d280e93a
Mar 29, 2019
- update module list · 5a5e044e
  Laurent Modolo authored 5 years ago
  
  5a5e044e
- update psmn modules · 1f8de176
  Laurent Modolo authored 5 years ago
  
  1f8de176
- hisat2: add v2.1.0 · b150232b
  Laurent Modolo authored 5 years ago
  
  b150232b
- update psmn module and hisat2 config · d51c969a
  Laurent Modolo authored 5 years ago
  
  d51c969a
- Merge branch 'nfontrod/nextflow-master' into dev · 88ce59a0
  Laurent Modolo authored 5 years ago
  
  88ce59a0
- hisat2: add samtools to singularity modules · e5bd9289
  Laurent Modolo authored 5 years ago
  
  e5bd9289
- hisat2: add samtools to docker · 1079c069
  Laurent Modolo authored 5 years ago
  
  1079c069
- hisat2: merge samtools and hisat2 in the process · 59b0f72d
  Laurent Modolo authored 5 years ago
  
  59b0f72d
- hisat2: update process and config to match new format · 58d2e60a
  Laurent Modolo authored 5 years ago
  
  58d2e60a
Mar 28, 2019
- htseq: add v0.11.2 · ad48514d
  Laurent Modolo authored 5 years ago
  
  ad48514d
- update psmn_modules · c46ea8a1
  Laurent Modolo authored 5 years ago
  
  c46ea8a1
Mar 27, 2019
- src/nf_modules/Hisat2/ -> src/nf_modules/hisat2/ · 215c8f71
  nfontrod authored 5 years ago
  
  215c8f71
- Merge branch 'master' of gitlab_lbmc:pipelines/nextflow · 07d9c6ff
  nfontrod authored 5 years ago
  
  07d9c6ff
Mar 26, 2019
- multiqc: add v1.7 · 420b7b9e
  Laurent Modolo authored 5 years ago
  
  420b7b9e
- update changelog for 0.2.9 · 7034a009
  Laurent Modolo authored 5 years ago
  
  v0.2.9
  
  7034a009
- update module list · ada3ed2b
  Laurent Modolo authored 5 years ago
  
  ada3ed2b
- fastp: add nf modules files · 0d0e5587
  Laurent Modolo authored 5 years ago
  
  0d0e5587
Mar 25, 2019
- update psmn modules · 3ba7b4a1
  Laurent Modolo authored 5 years ago
  
  3ba7b4a1
- fastp: add singularity and docker files · c0582237
  Laurent Modolo authored 5 years ago
  
  c0582237
- fix subread path ion build.sh · b7ff7a02
  Laurent Modolo authored 5 years ago
  
  b7ff7a02
- fix subread version in path · 558d45ee
  Laurent Modolo authored 5 years ago
  
  558d45ee
- subread: add singularity and docker files · cbf75eb1
  Laurent Modolo authored 5 years ago
  
  cbf75eb1