kallisto: fix singularity tests

src/nf_modules/kallisto/tests.sh

@@ -21,20 +21,20 @@
 if [ -x "$(command -v singularity)" ]; then
 ./nextflow src/nf_modules/kallisto/indexing.nf \
   -c src/nf_modules/kallisto/indexing.config \
-  -profile docker \
+  -profile singularity \
   --fasta "data/tiny_dataset/fasta/tiny_v2.fasta" \
   -resume
 
 ./nextflow src/nf_modules/kallisto/mapping_single.nf \
   -c src/nf_modules/kallisto/mapping_single.config \
-  -profile docker \
+  -profile singularity \
   --index "results/mapping/index/tiny_v2.index" \
   --fastq "data/tiny_dataset/fastq/tiny*_S.fastq" \
   -resume
 
 ./nextflow src/nf_modules/kallisto/mapping_paired.nf \
   -c src/nf_modules/kallisto/mapping_paired.config \
-  -profile docker \
+  -profile singularity \
   --index "results/mapping/index/tiny_v2.index" \
   --fastq "data/tiny_dataset/fastq/tiny*_R{1,2}.fastq" \
   -resume