add .sh helpers for singularity on the ccin2p3

src/singularity_modules/bcftools/1.7/bcftools

+#/bin/bash
+singularity exec /sps/lbmc/common/singularity/bcftools:1.7.img bcftools $@

src/singularity_modules/bedtools/2.25.0/bedtools

+#/bin/bash
+singularity exec /sps/lbmc/common/singularity/bedtools:2.25.0.img bedtools $@

src/singularity_modules/bioawk/1.0/bioawk

+#/bin/bash
+singularity exec /sps/lbmc/common/singularity/bioawk:1.0.img bioawk $@

src/singularity_modules/bowtie/1.2.2/bowtie

+#/bin/bash
+singularity exec /sps/lbmc/common/singularity/bowtie:1.2.2.img bowtie $@

src/singularity_modules/bowtie2/2.3.4.1/bowtie2

+#/bin/bash
+singularity exec /sps/lbmc/common/singularity/bowtie2:2.3.4.1.img bowtie2 $@

src/singularity_modules/bwa/0.7.17/bwa

+#/bin/bash
+singularity exec /sps/lbmc/common/singularity/bwa:0.7.17.img bwa $@

src/singularity_modules/canu/1.6/canu

+#/bin/bash
+singularity exec /sps/lbmc/common/singularity/canu:1.6.img canu $@

src/singularity_modules/cutadapt/1.14/cutadapt

+#/bin/bash
+singularity exec /sps/lbmc/common/singularity/cutadapt:1.14.img cutadapt $@

src/singularity_modules/cutadapt/1.15/cutadapt

+#/bin/bash
+singularity exec /sps/lbmc/common/singularity/cutadapt:1.15.img cutadapt $@

src/singularity_modules/cutadapt/2.1/cutadapt

+#/bin/bash
+singularity exec /sps/lbmc/common/singularity/cutadapt:2.1.img cutadapt $@

src/singularity_modules/deeptools/3.0.2/deeptools

+#/bin/bash
+singularity exec /sps/lbmc/common/singularity/deeptools:3.0.2.img deeptools $@

src/singularity_modules/deeptools/3.1.1/deeptools

+#/bin/bash
+singularity exec /sps/lbmc/common/singularity/deeptools:3.1.1.img deeptools $@

src/singularity_modules/fastp/0.19.7/fastp

+#/bin/bash
+singularity exec /sps/lbmc/common/singularity/fastp:0.19.7.img fastp $@

src/singularity_modules/fastqc/0.11.5/fastqc

+#/bin/bash
+singularity exec /sps/lbmc/common/singularity/fastqc:0.11.5.img fastqc $@

src/singularity_modules/file_handle/0.1.1/file_handle

+#/bin/bash
+singularity exec /sps/lbmc/common/singularity/file_handle:0.1.1.img file_handle $@

src/singularity_modules/gatk/4.0.8.1/gatk

+#/bin/bash
+singularity exec /sps/lbmc/common/singularity/gatk:4.0.8.1.img gatk $@

src/singularity_modules/hisat2/2.0.0/hisat2

+#/bin/bash
+singularity exec /sps/lbmc/common/singularity/hisat2:2.0.0.img hisat2 $@

src/singularity_modules/hisat2/2.1.0/hisat2

+#/bin/bash
+singularity exec /sps/lbmc/common/singularity/hisat2:2.1.0.img hisat2 $@

src/singularity_modules/htseq/0.11.2/htseq

+#/bin/bash
+singularity exec /sps/lbmc/common/singularity/htseq:0.11.2.img htseq $@

src/singularity_modules/htseq/0.8.0/htseq

+#/bin/bash
+singularity exec /sps/lbmc/common/singularity/htseq:0.8.0.img htseq $@