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Verified Commit fa64596b authored by Laurent Modolo's avatar Laurent Modolo
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umi_tools: add singularity module

parent 9fb4e109
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#/bin/sh
sudo singularity build --force bin/umi_tools:1.0.0.sif src/singularity_modules/umi_tools/1.0.0/umi_tools.def && \
singularity sign bin/umi_tools:1.0.0.sif
Bootstrap: docker
From: debian:stretch
%labels
MAINTAINER Laurent Modolo
%post
UMI_TOOLS_VERSION=1.0.0
PACKAGES="bash \
python3 \
python3-dev \
python3-pip \
gcc"
apt-get update && \
apt-get install -y --no-install-recommends ${PACKAGES} && \
apt-get clean
pip3 install setuptools
pip3 install umi_tools==${UMI_TOOLS_VERSION}
%environment
export UMI_TOOLS_VERSION=1.0.0
%runscript
exec /bin/bash "$@"
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