From fa64596b2767bc5646a80440a96724d81fb7937e Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Fri, 12 Apr 2019 15:30:25 +0200
Subject: [PATCH] umi_tools: add singularity module
---
.../umi_tools/1.0.0/build.sh | 3 +++
.../umi_tools/1.0.0/umi_tools.def | 26 +++++++++++++++++++
2 files changed, 29 insertions(+)
create mode 100755 src/singularity_modules/umi_tools/1.0.0/build.sh
create mode 100644 src/singularity_modules/umi_tools/1.0.0/umi_tools.def
diff --git a/src/singularity_modules/umi_tools/1.0.0/build.sh b/src/singularity_modules/umi_tools/1.0.0/build.sh
new file mode 100755
index 00000000..b9781cb9
--- /dev/null
+++ b/src/singularity_modules/umi_tools/1.0.0/build.sh
@@ -0,0 +1,3 @@
+#/bin/sh
+sudo singularity build --force bin/umi_tools:1.0.0.sif src/singularity_modules/umi_tools/1.0.0/umi_tools.def && \
+singularity sign bin/umi_tools:1.0.0.sif
diff --git a/src/singularity_modules/umi_tools/1.0.0/umi_tools.def b/src/singularity_modules/umi_tools/1.0.0/umi_tools.def
new file mode 100644
index 00000000..c4beca1a
--- /dev/null
+++ b/src/singularity_modules/umi_tools/1.0.0/umi_tools.def
@@ -0,0 +1,26 @@
+Bootstrap: docker
+From: debian:stretch
+
+%labels
+MAINTAINER Laurent Modolo
+
+%post
+UMI_TOOLS_VERSION=1.0.0
+PACKAGES="bash \
+ python3 \
+ python3-dev \
+ python3-pip \
+ gcc"
+
+apt-get update && \
+apt-get install -y --no-install-recommends ${PACKAGES} && \
+apt-get clean
+
+pip3 install setuptools
+pip3 install umi_tools==${UMI_TOOLS_VERSION}
+
+%environment
+export UMI_TOOLS_VERSION=1.0.0
+
+%runscript
+exec /bin/bash "$@"
--
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