Commits · e86790b76b0edd9c00f868a1e4b06f491ba9d281 · LBMC / nextflow · GitLab

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May 09, 2019
- conda_packages.sh: add R and python env · e86790b7
  Laurent Modolo authored May 9, 2019
  
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- Merge branch 'rseraphi/nextflow-master' · 571b04cd
  Laurent Modolo authored May 9, 2019
  
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  571b04cd
May 07, 2019
- docker r et python · ab070a70
  rseraph authored May 7, 2019
  
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- conda_packages.sh: add script to install conda packages for nf · 7dfbc487
  Laurent Modolo authored May 7, 2019
  
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  7dfbc487
- nf_modules: update ccin2p3 config · 99eb8705
  Laurent Modolo authored May 7, 2019
  
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  99eb8705
- nextflow.pbs: working qsub for ccin2p3 · 3650829c
  Laurent Modolo authored May 7, 2019
  
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  3650829c
May 03, 2019
- kallisto: indexing config sh conda env instead of source · 3da0a73c
  Laurent Modolo authored May 3, 2019
  
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- kallisto: indexing config add error log for in2p3 · 2547f52d
  Laurent Modolo authored May 3, 2019
  
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May 02, 2019
- nextflow.pbs: add correct fasta path · cee29ee2
  Laurent Modolo authored May 2, 2019
  
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- nextflow.pbs: change NF parameters order · c09d0f5c
  Laurent Modolo authored May 2, 2019
  
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- nextflow: update in2p3 test for demon queue · bf418ede
  Laurent Modolo authored May 2, 2019
  
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- nextflow.pbs: fix logs path · d8bde481
  Laurent Modolo authored May 2, 2019
  
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- nextflow.pbs: add context demon · abdea03a
  Laurent Modolo authored May 2, 2019
  
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Apr 17, 2019
- add pbs script for in2p3 · ca5b834f
  Laurent Modolo authored Apr 17, 2019
  
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Apr 16, 2019
- kallisto: try to remove option for in2p3 qsub · 6a9d1f73
  Laurent Modolo authored Apr 16, 2019
  
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- kallisto: index.config test mc_huge for indexing · 3cb0f062
  Laurent Modolo authored Apr 16, 2019
  
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  3cb0f062
- kallisto: indexing.config add queue for in2p3 · aa5dbf3d
  Laurent Modolo authored Apr 16, 2019
  
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- kallisto: add ccin2p3_conda profile for indexing · e069611c
  Laurent Modolo authored Apr 16, 2019
  
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- urqt: add in2p3 config · 950bd41f
  Laurent Modolo authored Apr 16, 2019
  
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- sratoolkit: add in2p3 config · e336cd2a
  Laurent Modolo authored Apr 16, 2019
  
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- samtools: add in2p3 config · 9d8b2010
  Laurent Modolo authored Apr 16, 2019
  
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  9d8b2010
- samblaster: add in2p3 config · 7505299c
  Laurent Modolo authored Apr 16, 2019
  
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  7505299c
- sambamba: add in2p3 config · a0f7c6dc
  Laurent Modolo authored Apr 16, 2019
  
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- rsem: add in2p3 config · cae8221a
  Laurent Modolo authored Apr 16, 2019
  
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- music: add in2p3 config · 520f4e9f
  Laurent Modolo authored Apr 16, 2019
  
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- multiqc: add in2p3 config · f60953e1
  Laurent Modolo authored Apr 16, 2019
  
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- macs2: add in2p3 config # Please enter the commit message for your changes. Lines starting · abd775c2
  Laurent Modolo authored Apr 16, 2019
  
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- htseq: add in2p3 config · 7e5b25f3
  Laurent Modolo authored Apr 16, 2019
  
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- hisat2: add in2p3 config · eeac2fbf
  Laurent Modolo authored Apr 16, 2019
  
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- fastqc: add in2p3 config · fecdfd5a
  Laurent Modolo authored Apr 16, 2019
  
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- fastp: add in2p3 config · f3d19ff9
  Laurent Modolo authored Apr 16, 2019
  
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- deeptools: add in2p3 config · 1e4f4848
  Laurent Modolo authored Apr 16, 2019
  
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- cutadapt: add in2p3 config · e573e51f
  Laurent Modolo authored Apr 16, 2019
  
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- bwa: add in2p3 config · 9aa69834
  Laurent Modolo authored Apr 16, 2019
  
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  9aa69834
- bowtie2: add in2p3 config · 5b50ecea
  Laurent Modolo authored Apr 16, 2019
  
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- bowtie: add in2p3 config · 7fc46b3c
  Laurent Modolo authored Apr 16, 2019
  
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  7fc46b3c
- bedtools: update in2p3 config · a567c6aa
  Laurent Modolo authored Apr 16, 2019
  
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  a567c6aa
- kallisto: add in2p3 config · e16a1a9f
  Laurent Modolo authored Apr 16, 2019
  
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- add .sh helpers for singularity on the ccin2p3 · 950e35f1
  Laurent Modolo authored Apr 16, 2019
  
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  950e35f1
- change .sif to .img for singularity img · a972f993
  Laurent Modolo authored Apr 16, 2019
  
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  a972f993