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Verified Commit 3da0a73c authored by Laurent Modolo's avatar Laurent Modolo
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kallisto: indexing config sh conda env instead of source

parent 2547f52d
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......@@ -50,7 +50,7 @@ profiles {
ccin2p3_conda {
process{
withName: index_fasta {
beforeScript = "source /sps/lbmc/common/miniconda3/init.sh"
beforeScript = "sh /sps/lbmc/common/miniconda3/init.sh"
conda = "/sps/lbmc/common/miniconda3/envs/kallisto_0.44.0"
scratch = true
stageInMode = "copy"
......
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