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Verified Commit cee29ee2 authored by Laurent Modolo's avatar Laurent Modolo
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nextflow.pbs: add correct fasta path

parent c09d0f5c
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......@@ -18,10 +18,9 @@
NF=/pbs/throng/lbmc/cl7/nextflow/19.04/nextflow
PIPELINE=/sps/lbmc/common/nextflow/src/nf_modules/kallisto/indexing.nf
CONFIG=/sps/lbmc/common/nextflow/src/nf_modules/kallisto/indexing.config
OPTIONx="--fasta \"data/tiny_dataset/fasta/tiny_v2.fasta\""
$NF \
$PIPELINE \
-c $CONFIG \
-profile ccin2p3_conda \
$OPTIONS
--fasta "/sps/lbmc/common/nextflow/data/tiny_dataset/fasta/tiny_v2.fasta"
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