From cee29ee2cdc9c89b71c378cfedb25a69bf4d7987 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Thu, 2 May 2019 17:28:18 +0200
Subject: [PATCH] nextflow.pbs: add correct fasta path

---
 src/nextflow.pbs | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/src/nextflow.pbs b/src/nextflow.pbs
index 7c144e8a..80bb9f89 100644
--- a/src/nextflow.pbs
+++ b/src/nextflow.pbs
@@ -18,10 +18,9 @@
 NF=/pbs/throng/lbmc/cl7/nextflow/19.04/nextflow
 PIPELINE=/sps/lbmc/common/nextflow/src/nf_modules/kallisto/indexing.nf
 CONFIG=/sps/lbmc/common/nextflow/src/nf_modules/kallisto/indexing.config
-OPTIONx="--fasta \"data/tiny_dataset/fasta/tiny_v2.fasta\""
 
 $NF \
 $PIPELINE \
 -c $CONFIG \
 -profile ccin2p3_conda \
-$OPTIONS
+--fasta "/sps/lbmc/common/nextflow/data/tiny_dataset/fasta/tiny_v2.fasta"
-- 
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