diff --git a/src/nextflow.pbs b/src/nextflow.pbs index 7c144e8a65b2dcaf5e48015297a442486a5bc2e3..80bb9f89abddcfe565f4d2de675e3e1daff86344 100644 --- a/src/nextflow.pbs +++ b/src/nextflow.pbs @@ -18,10 +18,9 @@ NF=/pbs/throng/lbmc/cl7/nextflow/19.04/nextflow PIPELINE=/sps/lbmc/common/nextflow/src/nf_modules/kallisto/indexing.nf CONFIG=/sps/lbmc/common/nextflow/src/nf_modules/kallisto/indexing.config -OPTIONx="--fasta \"data/tiny_dataset/fasta/tiny_v2.fasta\"" $NF \ $PIPELINE \ -c $CONFIG \ -profile ccin2p3_conda \ -$OPTIONS +--fasta "/sps/lbmc/common/nextflow/data/tiny_dataset/fasta/tiny_v2.fasta"