Commits · dev · LBMC / nextflow

Oct 27, 2022
- doc/getting_started.md: add env setup for charliecloud on the psmn · 9422d648
  Laurent Modolo authored 2 years ago
  
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  9422d648
Oct 19, 2022
- charliecloud change psmn img path · 0f09b334
  Laurent Modolo authored 2 years ago
  
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  0f09b334
Oct 18, 2022
- add slurm/charlicloud config for psmn debian11 · 6bc458b5
  Laurent Modolo authored 2 years ago
  
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  6bc458b5
- switch from charliecloud to podman · e79307f2
  Laurent Modolo authored 2 years ago
  
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  e79307f2
Oct 17, 2022
- add charlicloud conf · 59e74d63
  Laurent Modolo authored 2 years ago
  
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  59e74d63
- Merge remote-tracking branch 'origin/master' into dev · ec37e0ad
  Laurent Modolo authored 2 years ago
  
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  ec37e0ad
Oct 06, 2022
- add clustalo · d58b43e4
  Laurent Modolo authored 2 years ago
  
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  d58b43e4
- add tinycov · e604937e
  Laurent Modolo authored 2 years ago
  
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  e604937e
- r-bse 4.1.2 · 214de290
  Laurent Modolo authored 2 years ago
  
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  214de290
- hicstuff 3.1.3 · 12cbc2ce
  Laurent Modolo authored 2 years ago
  
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  12cbc2ce
- add CITE-seq_count · 94b9d77f
  Laurent Modolo authored 2 years ago
  
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  94b9d77f
- add hicstuff 3.1.3 · 4eb67fb8
  Laurent Modolo authored 2 years ago
  
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  4eb67fb8
- add sratoolkit 3 · 3b48957e
  Laurent Modolo authored 2 years ago
  
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  3b48957e
Aug 23, 2022
- add trinity 2.13.2 · ea1eb2ef
  Laurent Modolo authored 2 years ago
  
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  ea1eb2ef
Jul 06, 2022
- docker: add hicstuff 3.1.3 · bda59b8c
  Laurent Modolo authored 2 years ago
  
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  bda59b8c
Jun 08, 2022
- README.md: add nf-core utility link · 9fd02175
  nfontrod authored 2 years ago
  
  9fd02175
May 24, 2022
- fastp: update to 0.23.2 · c6cb3757
  Laurent Modolo authored 2 years ago
  
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  c6cb3757
May 19, 2022
- fix stringtie/2.1.1/docker_init.sh · cc15777e
  Laurent Modolo authored 2 years ago
  
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  cc15777e
- Merge: 88f47c9 (nanopipe/master) · 99349b14
  Laurent Modolo authored 2 years ago
  
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  99349b14
May 12, 2022
- src/in2p3.pbs : remove unnessary variable · 4194f0de
  Laurent Modolo authored 2 years ago
  
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  4194f0de
- working config and daemon job for in2p3 · 8b7e3616
  Laurent Modolo authored 2 years ago
  
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  8b7e3616
- nextflow.config: change ccin2p3 to slurm · e0b48dea
  Laurent Modolo authored 2 years ago
  
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  e0b48dea
May 09, 2022
- gffread: don't delete original gz · 4767397f
  Laurent Modolo authored 2 years ago
  
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  4767397f
May 06, 2022
- Merge: 23ddf03 (nanopipe/master) · d5f43633
  Laurent Modolo authored 2 years ago
  
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  d5f43633
Apr 28, 2022
- Close merge request #28 · 966a31ee
  Laurent Modolo authored 2 years ago
  
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  966a31ee
- htseq/1.99.2/Dockerfile: fix typo :2 · fa92e48e
  Laurent Modolo authored 2 years ago
  
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  fa92e48e
- Merge crey02/nextflow-add_htseq to close #29 · f27bf148
  Laurent Modolo authored 2 years ago
  
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  f27bf148
Apr 14, 2022
- src/nf_modules/gffread/main.nf: fix typo :58 · da99648b
  Laurent Modolo authored 2 years ago
  
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  da99648b
- src/nf_modules/gffread/main.nf: fix typo :59 · cd7e4a19
  Laurent Modolo authored 2 years ago
  
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  cd7e4a19
Mar 22, 2022
- gffread: fix typo :58 · 566d96a1
  Laurent Modolo authored 2 years ago
  
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  566d96a1
- gffread: unzip gtf for spliced_cds process · 9db26e04
  Laurent Modolo authored 2 years ago
  
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  9db26e04
- gffread: unzip input fasta · fbd31a43
  Laurent Modolo authored 2 years ago
  
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  fbd31a43
- picard: add normalize_fasta process · 965d869e
  Laurent Modolo authored 2 years ago
  
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  965d869e
- gffread: simplify extract cds process · 0ceb0fc5
  Laurent Modolo authored 2 years ago
  
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  0ceb0fc5
- gffread: escape $ :61 · cd5218a0
  Laurent Modolo authored 2 years ago
  
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  cd5218a0
- gffread: add spliced_cds process · 018a0af2
  Laurent Modolo authored 2 years ago
  
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  018a0af2
Mar 14, 2022
- src/nf_modules/hisat2/main.nf: remove default parameters · 92058047
  Laurent Modolo authored 3 years ago
  
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  92058047
Mar 07, 2022
- src/example_marseq.nf: update default cmd to v98 of genome · d1acbf15
  Laurent Modolo authored 3 years ago
  
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  d1acbf15
Mar 01, 2022
- hisat2: remove samtools report · c6865206
  Laurent Modolo authored 3 years ago
  
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  c6865206
- hisat2: change report file name · 170a745c
  Laurent Modolo authored 3 years ago
  
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  170a745c