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Verified Commit 4767397f authored by Laurent Modolo's avatar Laurent Modolo
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gffread: don't delete original gz

parent d5f43633
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......@@ -54,8 +54,8 @@ process spliced_cds {
file_prefix = file_id
}
"""
gzip -dc ${fasta} > ${fasta.simpleName}_un.fasta
gzip -dc ${gtf} > ${gtf.simpleName}_un.gtf
gzip -dck ${fasta} > ${fasta.simpleName}_un.fasta
gzip -dck ${gtf} > ${gtf.simpleName}_un.gtf
gffread ${gtf.simpleName}_un.gtf -g ${fasta.simpleName}_un.fasta -M \
-x ${file_prefix}.fasta
"""
......
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