add slurm/charlicloud config for psmn debian11

src/nextflow.config

@@ -36,8 +36,8 @@ profiles {
     }
   }
   podman {
-    podman.enabled = true
-    podman.cacheDir = "./bin/"
+    charliecloud.enabled = true
+    charliecloud.cacheDir = "./bin/"
     process {
       errorStrategy = 'finish'
       memory = '16GB'
@@ -80,46 +80,39 @@ profiles {
     }
   }
   psmn {
-    podman.enabled = true
-    podman.cacheDir = "/Xnfs/abc/podman/"
+    charliecloud.enabled = true
+    charliecloud.cacheDir = "/Xnfs/abc/charliecloud_img"
+    charliecloud.runOptions = "--bind /scratch:/scratch --bind /Xnfs:/Xnfs"
     process{
       errorStrategy = { sleep(Math.pow(2, task.attempt) * 200 as long); return 'retry' }
       maxRetries = 3
       withLabel: big_mem_mono_cpus {
         executor = "slurm"
-        clusterOptions = "-cwd -V"
         cpus = 1
         memory = "128GB"
-        time = "12h"
-        queue = "monointeldeb128,monointeldeb192"
+        time = "24h"
+        clusterOptions = "--partition=Lake"
       }
       withLabel: big_mem_multi_cpus {
-        executor = "sge"
-        clusterOptions = "-cwd -V"
+        executor = "slurm"
         cpus = 32
         memory = "192GB"
         time = "24h"
-        queue = "CLG*,SLG*,Epyc*"
-        penv = "openmp32"
-
+        clusterOptions = "--partition=Lake"
       }
       withLabel: small_mem_mono_cpus {
-        executor = "sge"
-        clusterOptions = "-cwd -V"
+        executor = "slurm"
         cpus = 1
         memory = "16GB"
-        time = "12h"
-        queue = "monointeldeb128,monointeldeb192"
+        time = "24h"
+        clusterOptions = "--partition=Lake"
       }
       withLabel: small_mem_multi_cpus {
-        executor = "sge"
-        clusterOptions = "-cwd -V"
+        executor = "slurm"
         cpus = 32
         memory = "16GB"
         time = "24h"
-        queue = "CLG*,SLG*,Epyc*"
-        penv = "openmp32"
-
+        clusterOptions = "--partition=Lake"
       }
     }
   }