add charlicloud conf

src/nextflow.config

@@ -35,8 +35,10 @@ profiles {
       }
     }
   }
-  podman {
-    podman.enabled = true
+  charliecloud {
+    charliecloud.enabled = true
+    charliecloud.cacheDir = "./bin/"
+    charliecloud.runOptions = "--bind /Xnfs:/Xnfs --bind /scratch:/scratch"
     process {
       errorStrategy = 'finish'
       memory = '16GB'
@@ -79,14 +81,14 @@ profiles {
     }
   }
   psmn {
-    singularity.enabled = true
-    singularity.cacheDir = "/Xnfs/abc/singularity/"
-    singularity.runOptions = "--bind /Xnfs,/scratch"
+    charliecloud.enabled = true
+    charliecloud.cacheDir = "/Xnfs/abc/charliecloud/"
+    charliecloud.runOptions = "--bind /Xnfs:/Xnfs --bind /scratch:/scratch"
     process{
       errorStrategy = { sleep(Math.pow(2, task.attempt) * 200 as long); return 'retry' }
       maxRetries = 3
       withLabel: big_mem_mono_cpus {
-        executor = "sge"
+        executor = "slurm"
         clusterOptions = "-cwd -V"
         cpus = 1
         memory = "128GB"