Commits · ce06ca062bd2b101eb604f53a63767676ece7c82 · LBMC / Hub / hic · GitLab

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Sep 20, 2023
- correct picard pcr filter for hicpro · ce06ca06
  Mia Croiset authored 1 year ago
  
  Verified
  
  ce06ca06
Sep 12, 2023
- picard markduplicates process medium to high · 382d071a
  Mia Croiset authored 1 year ago
  
  Verified
  
  382d071a
Sep 11, 2023
- delete error redirection from cooltools module · 386db97c
  Mia Croiset authored 1 year ago
  
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  386db97c
Sep 06, 2023
- correct versions hicplotmatrix · fd1b0c71
  Mia Croiset authored 1 year ago
  
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  fd1b0c71
- add versions for hicplotmatrix · b26d68dd
  Mia Croiset authored 1 year ago
  
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  b26d68dd
Sep 01, 2023
- add new label for matrix plotting · 602db2ae
  Mia Croiset authored 1 year ago
  
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  602db2ae
Aug 29, 2023
- update modules to add versions · cc0944fa
  Mia Croiset authored 1 year ago
  
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  cc0944fa
- set high mem process 300GB · 6c8e8277
  Mia Croiset authored 1 year ago
  
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  6c8e8277
Jul 13, 2023
- Update README files · d08ba093
  Mia Croiset authored 1 year ago
  
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  d08ba093
- HicPlotMatrix process_high_memory · 3ec3a943
  Mia Croiset authored 1 year ago
  
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  3ec3a943
Jul 12, 2023
- go back to default settings · 50007030
  Mia Croiset authored 1 year ago
  
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  50007030
Jul 10, 2023
- go back to base config · e3a11f06
  Mia Croiset authored 1 year ago
  
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  e3a11f06
Jul 03, 2023
- try enable charliecloud in docker param · c56a08a6
  Mia Croiset authored 1 year ago
  
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  c56a08a6
- try enable docker with charliecloud · ef38b8ca
  Mia Croiset authored 1 year ago
  
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  ef38b8ca
- try charliecloud registry · c1fc968a
  Mia Croiset authored 1 year ago
  
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  c1fc968a
- test add charliecloud docker registry · 4dd71242
  Mia Croiset authored 1 year ago
  
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  4dd71242
Jun 29, 2023
- try picard hicpro + delete temp bam sorted files · 9912cc94
  Mia Croiset authored 1 year ago
  
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  9912cc94
Jun 23, 2023
- TOFIX filter picard for hicpro correction · 88d6463e
  Mia Croiset authored 1 year ago
  
  Verified
  
  88d6463e
Jun 16, 2023
- update json schema · 29d92d03
  Mia Croiset authored 1 year ago
  
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  29d92d03
Jun 14, 2023
- update configs with hicstuff parameters · b6a84d53
  Mia Croiset authored 1 year ago
  
  Verified
  
  b6a84d53
- main.nf choice of workflow · 05c95334
  Mia Croiset authored 1 year ago
  
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  05c95334
- update docker registry + delete samtools index · 7da045e1
  Mia Croiset authored 1 year ago
  
  Verified
  
  7da045e1
Jun 13, 2023
- correct subworkflow filter pcr dup · fa0b5e5e
  Mia Croiset authored 1 year ago
  
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  fa0b5e5e
Jun 12, 2023
- refactorisation remove gatk module · e92a4085
  Mia Croiset authored 1 year ago
  
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  e92a4085
- refactorisation add filter_pcr_picard to schema · 35bdac8e
  Mia Croiset authored 1 year ago
  
  Verified
  
  35bdac8e
- Merge branch 'hicpro_picard' filter pcr dup for hicpro · 8b860c6d
  Mia Croiset authored 1 year ago
  
  Verified
  
  8b860c6d
- filter pcr dup for hicpro · 044cb4d3
  Mia Croiset authored 1 year ago
  
  Verified
  
  044cb4d3
Jun 08, 2023
- correct path MarkDuplicates · 4f3bd901
  Mia Croiset authored 1 year ago
  
  Verified
  
  4f3bd901
Jun 05, 2023
- subworkflows/local/hicstuff_sub.nf: remove some unused import and rename the SAMTOOLS_SORT process · 46b3c445
  nfontrod authored 1 year ago
  
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  46b3c445
- subworkflows/local/hicstuff_sub.nf: update · ad343845
  nfontrod authored 1 year ago
  
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  ad343845
- subworkflows/local/hicstuff_sub.nf: update · 40694c85
  nfontrod authored 1 year ago
  
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  40694c85
- modules/nf-core/custom/filterbam/main.nf: add new module · b150868b
  nfontrod authored 1 year ago
  
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  b150868b
Jun 02, 2023
- TO FIX markduplicates picard · b607dc0e
  Mia Croiset authored 1 year ago
  
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  b607dc0e
Jun 01, 2023
- suppr view · 59bd5bf1
  Mia Croiset authored 1 year ago
  
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  59bd5bf1
- correct path samtools sort · 9107a54e
  Mia Croiset authored 1 year ago
  
  Verified
  
  9107a54e
- correct path of markduplicates · 09e19d2d
  Mia Croiset authored 1 year ago
  
  Verified
  
  09e19d2d
- TO FIX markduplicates pcr filter option · f8fcb912
  Mia Croiset authored 1 year ago
  
  Verified
  
  f8fcb912
- Merge pull request #169 from nf-core/dev · fe4ac656
  Maxime U Garcia authored 1 year ago
  
  Release candidate 2.1.0
  Unverified
  
  fe4ac656
- Merge pull request #168 from maxulysse/release_2.1.0 · c3cf64d1
  Maxime U Garcia authored 1 year ago
  
  CHORES: Prepare release
  Unverified
  
  c3cf64d1
- Apply suggestions from code review · 57b87d86
  Maxime U Garcia authored 1 year ago
  
  Co-authored-by: Adam Talbot <12817534+adamrtalbot@users.noreply.github.com>
  Unverified
  
  57b87d86