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Verified Commit 50007030 authored by Mia Croiset's avatar Mia Croiset
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go back to default settings

parent e3a11f06
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......@@ -40,8 +40,8 @@ process {
time = { check_max( 8.h * task.attempt, 'time' ) }
}
withLabel:process_high {
cpus = { check_max( 8 * task.attempt, 'cpus' ) } //TODO go back to 16 when not local
memory = { check_max( 31.GB * task.attempt, 'memory' ) }//TODO go back to 64 when not local
cpus = { check_max( 16 * task.attempt, 'cpus' ) }
memory = { check_max( 64.GB * task.attempt, 'memory' ) }
time = { check_max( 16.h * task.attempt, 'time' ) }
}
withLabel:process_long {
......
......@@ -31,9 +31,9 @@ params {
save_aligned_intermediates = false
bwt2_opts_end2end = '--very-sensitive -L 30 --score-min L,-0.6,-0.2 --end-to-end --reorder'
bwt2_opts_trimmed = '--very-sensitive -L 20 --score-min L,-0.6,-0.2 --end-to-end --reorder'
keep_dups = true
keep_dups = false
keep_multi = false
filter_pcr_picard = true
filter_pcr_picard = false
min_mapq = 10
// Digestion Hi-C
......
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