From 50007030914e67200501356743f77a8ac2686995 Mon Sep 17 00:00:00 2001
From: Mia Croiset <mia.croiset@ens-lyon.fr>
Date: Wed, 12 Jul 2023 09:46:15 +0200
Subject: [PATCH] go back to default settings
---
conf/base.config | 4 ++--
nextflow.config | 4 ++--
2 files changed, 4 insertions(+), 4 deletions(-)
diff --git a/conf/base.config b/conf/base.config
index eff5eba..e778a4e 100644
--- a/conf/base.config
+++ b/conf/base.config
@@ -40,8 +40,8 @@ process {
time = { check_max( 8.h * task.attempt, 'time' ) }
}
withLabel:process_high {
- cpus = { check_max( 8 * task.attempt, 'cpus' ) } //TODO go back to 16 when not local
- memory = { check_max( 31.GB * task.attempt, 'memory' ) }//TODO go back to 64 when not local
+ cpus = { check_max( 16 * task.attempt, 'cpus' ) }
+ memory = { check_max( 64.GB * task.attempt, 'memory' ) }
time = { check_max( 16.h * task.attempt, 'time' ) }
}
withLabel:process_long {
diff --git a/nextflow.config b/nextflow.config
index 6582b79..abcab99 100644
--- a/nextflow.config
+++ b/nextflow.config
@@ -31,9 +31,9 @@ params {
save_aligned_intermediates = false
bwt2_opts_end2end = '--very-sensitive -L 30 --score-min L,-0.6,-0.2 --end-to-end --reorder'
bwt2_opts_trimmed = '--very-sensitive -L 20 --score-min L,-0.6,-0.2 --end-to-end --reorder'
- keep_dups = true
+ keep_dups = false
keep_multi = false
- filter_pcr_picard = true
+ filter_pcr_picard = false
min_mapq = 10
// Digestion Hi-C
--
GitLab