diff --git a/conf/base.config b/conf/base.config index eff5eba6b3e73735ef10d9263640a1437ad32058..e778a4e0678255a83a2112aeac20f58d238eb6f1 100644 --- a/conf/base.config +++ b/conf/base.config @@ -40,8 +40,8 @@ process { time = { check_max( 8.h * task.attempt, 'time' ) } } withLabel:process_high { - cpus = { check_max( 8 * task.attempt, 'cpus' ) } //TODO go back to 16 when not local - memory = { check_max( 31.GB * task.attempt, 'memory' ) }//TODO go back to 64 when not local + cpus = { check_max( 16 * task.attempt, 'cpus' ) } + memory = { check_max( 64.GB * task.attempt, 'memory' ) } time = { check_max( 16.h * task.attempt, 'time' ) } } withLabel:process_long { diff --git a/nextflow.config b/nextflow.config index 6582b79628b595766fff6ace5a7048d75341bd2f..abcab999ca5860113e2f9b74af2d1cf562afec89 100644 --- a/nextflow.config +++ b/nextflow.config @@ -31,9 +31,9 @@ params { save_aligned_intermediates = false bwt2_opts_end2end = '--very-sensitive -L 30 --score-min L,-0.6,-0.2 --end-to-end --reorder' bwt2_opts_trimmed = '--very-sensitive -L 20 --score-min L,-0.6,-0.2 --end-to-end --reorder' - keep_dups = true + keep_dups = false keep_multi = false - filter_pcr_picard = true + filter_pcr_picard = false min_mapq = 10 // Digestion Hi-C