Skip to content
Snippets Groups Projects
Verified Commit 05c95334 authored by Mia Croiset's avatar Mia Croiset
Browse files

main.nf choice of workflow

parent 7da045e1
No related branches found
No related tags found
No related merge requests found
......@@ -148,6 +148,8 @@ params {
distance_law = false
filter_pcr = false
filter_pcr_picard = true
workflow = 'hicstuff'
}
process {
......
......@@ -35,12 +35,18 @@ WorkflowMain.initialise(workflow, params, log)
*/
include { HIC } from './workflows/hic'
include { HICSTUFF } from './workflows/hicstuff'
//
// WORKFLOW: Run main nf-core/hic analysis pipeline
//
workflow NFCORE_HIC {
HIC ()
if (params.workflow == "hicpro" ){
HIC ()
}
else if ( params.workflow == "hicstuff") {
HICSTUFF ()
}
}
/*
......
0% Loading or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment