diff --git a/conf/hicstuff.config b/conf/hicstuff.config index f036e4c364a8b28dad17a7133adcb3d07a8537fb..55f6a237b70f04dca2f026b5e272bb42369cfec3 100644 --- a/conf/hicstuff.config +++ b/conf/hicstuff.config @@ -148,6 +148,8 @@ params { distance_law = false filter_pcr = false filter_pcr_picard = true + + workflow = 'hicstuff' } process { diff --git a/main.nf b/main.nf index 82aaf0f200b77db6710472f821c715376d2e5668..942feda8495cb7decfaafdb3d01163461d4cbab9 100644 --- a/main.nf +++ b/main.nf @@ -35,12 +35,18 @@ WorkflowMain.initialise(workflow, params, log) */ include { HIC } from './workflows/hic' +include { HICSTUFF } from './workflows/hicstuff' // // WORKFLOW: Run main nf-core/hic analysis pipeline // workflow NFCORE_HIC { - HIC () + if (params.workflow == "hicpro" ){ + HIC () + } + else if ( params.workflow == "hicstuff") { + HICSTUFF () + } } /*