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Verified Commit 05c95334 authored by Mia Croiset's avatar Mia Croiset
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main.nf choice of workflow

parent 7da045e1
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...@@ -148,6 +148,8 @@ params { ...@@ -148,6 +148,8 @@ params {
distance_law = false distance_law = false
filter_pcr = false filter_pcr = false
filter_pcr_picard = true filter_pcr_picard = true
workflow = 'hicstuff'
} }
process { process {
......
...@@ -35,12 +35,18 @@ WorkflowMain.initialise(workflow, params, log) ...@@ -35,12 +35,18 @@ WorkflowMain.initialise(workflow, params, log)
*/ */
include { HIC } from './workflows/hic' include { HIC } from './workflows/hic'
include { HICSTUFF } from './workflows/hicstuff'
// //
// WORKFLOW: Run main nf-core/hic analysis pipeline // WORKFLOW: Run main nf-core/hic analysis pipeline
// //
workflow NFCORE_HIC { workflow NFCORE_HIC {
HIC () if (params.workflow == "hicpro" ){
HIC ()
}
else if ( params.workflow == "hicstuff") {
HICSTUFF ()
}
} }
/* /*
......
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