bin/__init__.py

bin/hicstuff_bam2pairs.py

bin/hicstuff_build_matrix.py

bin/hicstuff_digest.py

bin/hicstuff_distance_law.py

bin/hicstuff_filter.py

bin/hicstuff_filter_pcr.py

bin/hicstuff_fragments.py

bin/hicstuff_io.py

bin/hicstuff_log.py

conf/base.config

conf/hicstuff.config

conf/modules.config

modules/local/filterbam/main.nf

modules/local/hicexplorer/hicPlotMatrix.nf

modules/local/hicstuff/align_bowtie2.nf

modules/local/hicstuff/bam2pairs.nf

modules/local/hicstuff/build_matrix.nf

modules/local/hicstuff/build_matrix_cool.nf

modules/local/hicstuff/build_matrix_cool_alt.nf