TO FIX markduplicates pcr filter option (f8fcb912) · Commits · LBMC / Hub / hic · GitLab

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f8fcb912

Verified Commit f8fcb912 authored 1 year ago by Mia Croiset

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TO FIX markduplicates pcr filter option

parent 364489ed

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Changes 9

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conf/base.config 34 additions, 2 deletions

conf/base.config
conf/hicstuff.config 29 additions, 4 deletions

conf/hicstuff.config
modules/nf-core/custom/markduplicates/main.nf 54 additions, 0 deletions

modules/nf-core/custom/markduplicates/main.nf
modules/nf-core/custom/markduplicates/meta.yml 72 additions, 0 deletions

modules/nf-core/custom/markduplicates/meta.yml
modules/nf-core/custom/samtools/index/main.nf 46 additions, 0 deletions

modules/nf-core/custom/samtools/index/main.nf
modules/nf-core/custom/samtools/index/meta.yml 53 additions, 0 deletions

modules/nf-core/custom/samtools/index/meta.yml
modules/nf-core/custom/sort/main.nf 49 additions, 0 deletions

modules/nf-core/custom/sort/main.nf
modules/nf-core/custom/sort/meta.yml 48 additions, 0 deletions

modules/nf-core/custom/sort/meta.yml
subworkflows/local/hicstuff_sub.nf 32 additions, 4 deletions

subworkflows/local/hicstuff_sub.nf

with 417 additions and 10 deletions

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