Commits · 0d3f5da910f21eed49035d5812837ebe661fbd70 · LBMC / Delattre / kmer diff

Sep 11, 2023
- main.nf: add sample_reads modules · 0d3f5da9
  Laurent Modolo authored 1 year ago
  
  0d3f5da9
Aug 30, 2023
- block clustering · 811745ca
  Laurent Modolo authored 1 year ago
  
  811745ca
Jun 13, 2023
- fix kmer_merge to kmer_plot connection · 1c0e4099
  Laurent Modolo authored 1 year ago
  
  1c0e4099
Jun 12, 2023
- fix typo for kmerclust_plot entry · 73cfaf21
  Laurent Modolo authored 1 year ago
  
  73cfaf21
Jun 09, 2023
- main.nf: fix typo · af3a7635
  Laurent Modolo authored 1 year ago
  
  af3a7635
- split kmerclust into multiple processes · 765b7e36
  Laurent Modolo authored 1 year ago
  
  765b7e36
- split plot from the analysis · 086a8767
  Laurent Modolo authored 1 year ago
  
  086a8767
Jun 08, 2023
- main.nf: fix typo · 33f33c7b
  Laurent Modolo authored 1 year ago
  
  33f33c7b
- pass params.csv as a channel to kmerclust · 5f1c445f
  Laurent Modolo authored 1 year ago
  
  5f1c445f
Jun 07, 2023
- add kmerclust module to main.nf · ed018a7e
  Laurent Modolo authored 1 year ago
  
  ed018a7e
May 23, 2023
- change collate step to collate by species · b67793d5
  Laurent Modolo authored 2 years ago
  
  b67793d5
May 12, 2023
- remove COLLATEKMER2 · 239ed786
  Laurent Modolo authored 2 years ago
  
  239ed786
May 10, 2023
- fix typo · 9a17ca7e
  Laurent Modolo authored 2 years ago
  
  9a17ca7e
- split COLLATEKMER in 2 steps · 0a3203a1
  Laurent Modolo authored 2 years ago
  
  0a3203a1
May 09, 2023
- main.nf: keep r2 id information · 5554388f
  Laurent Modolo authored 2 years ago
  
  5554388f
May 02, 2023
- remove mergekmer2 from main.nf · 7d211e60
  Laurent Modolo authored 2 years ago
  
  7d211e60
Apr 28, 2023
- fix collatekmer · a7d66307
  Laurent Modolo authored 2 years ago
  
  a7d66307
- add kmersize parameter · f9892e16
  Laurent Modolo authored 2 years ago
  
  f9892e16
- fix MERGEKMER inclusion · 796d4099
  Laurent Modolo authored 2 years ago
  
  796d4099
- main.nf: add 2 phases of merge · b35acdb3
  Laurent Modolo authored 2 years ago
  
  b35acdb3
Apr 27, 2023
- add collatekmer step · 2c070852
  Laurent Modolo authored 2 years ago
  
  2c070852
- main.nf: remove view() · a68dbc6d
  Laurent Modolo authored 2 years ago
  
  a68dbc6d
Apr 26, 2023
- main.nf: add grouping before merge · 7b01e646
  Laurent Modolo authored 2 years ago
  
  7b01e646
- add mergekmer module · 11ae71a4
  Laurent Modolo authored 2 years ago
  
  11ae71a4
Apr 20, 2023
- add split process · 93338e8d
  Laurent Modolo authored 2 years ago
  
  93338e8d
- switch back to fastkmers · d51d04c3
  Laurent Modolo authored 2 years ago
  
  d51d04c3
Apr 18, 2023
- main.nf: add kmc · 4dd52f26
  Laurent Modolo authored 2 years ago
  
  4dd52f26
Mar 29, 2023
- split r1 and r2 · cbe4c374
  Laurent Modolo authored 2 years ago
  
  cbe4c374
- fix csv parsing · 7a6edf42
  Laurent Modolo authored 2 years ago
  
  7a6edf42
- add nextflow pipeline for fastkmers · 5f215dd4
  Laurent Modolo authored 2 years ago
  
  5f215dd4