block clustering

src/main.nf

@@ -32,7 +32,10 @@ workflow {
   MERGEKMER(FASTKMERS.out.csv.groupTuple())
   COLLATEKMER(MERGEKMER.out.csv.map{it -> [it[0].specie, it[1]] }.groupTuple())
   KMERCLUST_LOAD(COLLATEKMER.out.csv, params_csv.collect())
-  KMERCLUST(Channel.of(1..params.bootstrap).combine(KMERCLUST_LOAD.out.rdata))
+/*
+  KMERCLUST(KMERCLUST_LOAD.out.rdata)
+  KMERCLUST_BOOT(Channel.of(1..params.bootstrap).combine(KMERCLUST_LOAD.out.rdata))
   KMERCLUST_MERGE(KMERCLUST.out.rdata.groupTuple())
   KMERCLUST_PLOT(KMERCLUST_MERGE.out.rdata.mix(KMERCLUST_LOAD.out.rdata).groupTuple())
+*/
 }

src/modules/kmerclust.nf

@@ -2,7 +2,7 @@ process KMERCLUST_LOAD {
     tag "$specie"
     label 'big_mem_mono_cpus'
 
-    container "lbmc/kmerclust:0.0.3"
+    container "lbmc/kmerclust:0.0.4"
 
     input:
     tuple val(specie), path(csv)
@@ -19,7 +19,7 @@ process KMERCLUST_LOAD {
 
     cat <<-END_VERSIONS > versions.yml
     "${task.process}":
-        Rkmerclust: 0.0.3 
+        Rkmerclust: 0.0.4 
     END_VERSIONS
     """
 }
@@ -28,7 +28,7 @@ process KMERCLUST_BOOT {
     tag "$specie"
     label 'big_mem_multi_cpus'
 
-    container "lbmc/kmerclust:0.0.3"
+    container "lbmc/kmerclust:0.0.4"
     publishDir "results/${params.kmer_size}/${specie}/", mode: 'copy'
 
     input:
@@ -45,7 +45,7 @@ process KMERCLUST_BOOT {
 
     cat <<-END_VERSIONS > versions.yml
     "${task.process}":
-        Rkmerclust: 0.0.3 
+        Rkmerclust: 0.0.4 
     END_VERSIONS
     """
 }
@@ -54,7 +54,7 @@ process KMERCLUST {
     tag "$specie"
     label 'big_mem_multi_cpus'
 
-    container "lbmc/kmerclust:0.0.3"
+    container "lbmc/kmerclust:0.0.4"
     publishDir "results/${params.kmer_size}/${specie}/", mode: 'copy'
 
     input:
@@ -71,7 +71,7 @@ process KMERCLUST {
 
     cat <<-END_VERSIONS > versions.yml
     "${task.process}":
-        Rkmerclust: 0.0.3 
+        Rkmerclust: 0.0.4 
     END_VERSIONS
     """
 }
@@ -80,7 +80,7 @@ process KMERCLUST_MERGE {
     tag "$specie"
     label 'big_mem_mono_cpus'
 
-    container "lbmc/kmerclust:0.0.3"
+    container "lbmc/kmerclust:0.0.4"
     publishDir "results/${params.kmer_size}/${specie}/", mode: 'copy'
 
     input:
@@ -97,7 +97,7 @@ process KMERCLUST_MERGE {
 
     cat <<-END_VERSIONS > versions.yml
     "${task.process}":
-        Rkmerclust: 0.0.3 
+        Rkmerclust: 0.0.4 
     END_VERSIONS
     """
 }
@@ -106,7 +106,7 @@ process KMERCLUST_PLOT {
     tag "$specie"
     label 'big_mem_mono_cpus'
 
-    container "lbmc/kmerclust:0.0.3"
+    container "lbmc/kmerclust:0.0.4"
     publishDir "results/${params.kmer_size}/${specie}/", mode: 'copy'
 
     input:
@@ -123,7 +123,7 @@ process KMERCLUST_PLOT {
 
     cat <<-END_VERSIONS > versions.yml
     "${task.process}":
-        Rkmerclust: 0.0.3 
+        Rkmerclust: 0.0.4 
     END_VERSIONS
     """
 }