switch back to fastkmers

src/main.nf

@@ -4,7 +4,7 @@ nextflow.enable.dsl=2
 Testing pipeline for marseq scRNASeq analysis
 */
 
-include { KMC } from "./modules/kmc.nf"
+include { FASTKMERS } from "./modules/fastkmers"
 
 
 Channel.fromPath( file(params.csv) )
@@ -18,5 +18,5 @@ Channel.fromPath( file(params.csv) )
                     .set{ fastq }
 
 workflow {
-  KMC(fastq.r1.mix(fastq.r2))
+  FASTKMERS(fastq.r1.mix(fastq.r2).splitFastq( by: 1000000, compress: true, file: true ))
 }