From d51d04c346a753ec51260442e78db21bd55be9ef Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Thu, 20 Apr 2023 15:10:19 +0200
Subject: [PATCH] switch back to fastkmers
---
src/main.nf | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/src/main.nf b/src/main.nf
index b10565c..7269cae 100644
--- a/src/main.nf
+++ b/src/main.nf
@@ -4,7 +4,7 @@ nextflow.enable.dsl=2
Testing pipeline for marseq scRNASeq analysis
*/
-include { KMC } from "./modules/kmc.nf"
+include { FASTKMERS } from "./modules/fastkmers"
Channel.fromPath( file(params.csv) )
@@ -18,5 +18,5 @@ Channel.fromPath( file(params.csv) )
.set{ fastq }
workflow {
- KMC(fastq.r1.mix(fastq.r2))
+ FASTKMERS(fastq.r1.mix(fastq.r2).splitFastq( by: 1000000, compress: true, file: true ))
}
--
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