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Verified Commit f9892e16 authored by Laurent Modolo's avatar Laurent Modolo
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add kmersize parameter

parent 796d4099
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......@@ -3,6 +3,7 @@ nextflow.enable.dsl=2
/*
Testing pipeline for marseq scRNASeq analysis
*/
params.kmer_size = 31
include { SPLIT } from "./modules/split"
include { FASTKMERS } from "./modules/fastkmers"
......
......@@ -15,7 +15,7 @@ process FASTKMERS {
script:
def args = task.ext.args ?: ''
"""
fastkmers -k 31 ${fastq} > ${fastq.simpleName}.csv
fastkmers -k ${params.kmer_size} ${fastq} > ${fastq.simpleName}.csv
cat <<-END_VERSIONS > versions.yml
......
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