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Verified Commit b35acdb3 authored by Laurent Modolo's avatar Laurent Modolo
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main.nf: add 2 phases of merge

parent 2c070852
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......@@ -7,6 +7,7 @@ Testing pipeline for marseq scRNASeq analysis
include { SPLIT } from "./modules/split"
include { FASTKMERS } from "./modules/fastkmers"
include { MERGEKMER } from "./modules/mergekmer"
include { MERGEKMER2 } from "./modules/mergekmer"
include { COLLATEKMER } from "./modules/mergekmer"
......@@ -23,6 +24,7 @@ Channel.fromPath( file(params.csv) )
workflow {
SPLIT(fastq.r1.mix(fastq.r2))
FASTKMERS(SPLIT.out.fastq.transpose())
MERGEKMER(FASTKMERS.out.csv.groupTuple())
COLLATEKMER(MERGEKMER.out.csv)
MERGEKMER(FASTKMERS.out.csv.groupTuple(size: 10))
MERGEKMER2(MERGEKMER.out.csv.groupTuple())
COLLATEKMER(MERGEKMER2.out.csv)
}
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