From b35acdb3240b6a838771d6f1f07e150daccc908e Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Fri, 28 Apr 2023 09:04:55 +0200
Subject: [PATCH] main.nf: add 2 phases of merge
---
src/main.nf | 6 ++++--
1 file changed, 4 insertions(+), 2 deletions(-)
diff --git a/src/main.nf b/src/main.nf
index e60107b..b008dec 100644
--- a/src/main.nf
+++ b/src/main.nf
@@ -7,6 +7,7 @@ Testing pipeline for marseq scRNASeq analysis
include { SPLIT } from "./modules/split"
include { FASTKMERS } from "./modules/fastkmers"
include { MERGEKMER } from "./modules/mergekmer"
+include { MERGEKMER2 } from "./modules/mergekmer"
include { COLLATEKMER } from "./modules/mergekmer"
@@ -23,6 +24,7 @@ Channel.fromPath( file(params.csv) )
workflow {
SPLIT(fastq.r1.mix(fastq.r2))
FASTKMERS(SPLIT.out.fastq.transpose())
- MERGEKMER(FASTKMERS.out.csv.groupTuple())
- COLLATEKMER(MERGEKMER.out.csv)
+ MERGEKMER(FASTKMERS.out.csv.groupTuple(size: 10))
+ MERGEKMER2(MERGEKMER.out.csv.groupTuple())
+ COLLATEKMER(MERGEKMER2.out.csv)
}
--
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