diff --git a/src/main.nf b/src/main.nf index e60107b8555ef5a4a31b417bf1158e5bc1161da2..b008decf6a746e5a257d48ff4b208625f09e4e7c 100644 --- a/src/main.nf +++ b/src/main.nf @@ -7,6 +7,7 @@ Testing pipeline for marseq scRNASeq analysis include { SPLIT } from "./modules/split" include { FASTKMERS } from "./modules/fastkmers" include { MERGEKMER } from "./modules/mergekmer" +include { MERGEKMER2 } from "./modules/mergekmer" include { COLLATEKMER } from "./modules/mergekmer" @@ -23,6 +24,7 @@ Channel.fromPath( file(params.csv) ) workflow { SPLIT(fastq.r1.mix(fastq.r2)) FASTKMERS(SPLIT.out.fastq.transpose()) - MERGEKMER(FASTKMERS.out.csv.groupTuple()) - COLLATEKMER(MERGEKMER.out.csv) + MERGEKMER(FASTKMERS.out.csv.groupTuple(size: 10)) + MERGEKMER2(MERGEKMER.out.csv.groupTuple()) + COLLATEKMER(MERGEKMER2.out.csv) }