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Verified Commit 4dd52f26 authored by Laurent Modolo's avatar Laurent Modolo
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main.nf: add kmc

parent a8f12adc
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......@@ -4,7 +4,7 @@ nextflow.enable.dsl=2
Testing pipeline for marseq scRNASeq analysis
*/
include { FASTKMERS } from "./modules/fastkmers.nf"
include { KMC } from "./modules/kmc.nf"
Channel.fromPath( file(params.csv) )
......@@ -18,5 +18,5 @@ Channel.fromPath( file(params.csv) )
.set{ fastq }
workflow {
FASTKMERS(fastq.r1.mix(fastq.r2))
KMC(fastq.r1.mix(fastq.r2))
}
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