From 4dd52f26ce8f126d3aa5b225ce87922db0090c21 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Tue, 18 Apr 2023 14:53:22 +0200
Subject: [PATCH] main.nf: add kmc
---
src/main.nf | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/src/main.nf b/src/main.nf
index 1e27cd6..b10565c 100644
--- a/src/main.nf
+++ b/src/main.nf
@@ -4,7 +4,7 @@ nextflow.enable.dsl=2
Testing pipeline for marseq scRNASeq analysis
*/
-include { FASTKMERS } from "./modules/fastkmers.nf"
+include { KMC } from "./modules/kmc.nf"
Channel.fromPath( file(params.csv) )
@@ -18,5 +18,5 @@ Channel.fromPath( file(params.csv) )
.set{ fastq }
workflow {
- FASTKMERS(fastq.r1.mix(fastq.r2))
+ KMC(fastq.r1.mix(fastq.r2))
}
--
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